Past Publications using BD Rhapsody System

Updated September 19, 2024 21:22

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BD-30407 (v1.0) 0621 / Formerly 23-22630-00

Past Publications using BD Rhapsody System

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Year	Title	Publication	Citation
2020	A novel recombinant cccDNA-based mouse model with long term maintenance of rcccDNA and antigenemia	Antiviral Research	Wu M, Wang C, Shi B, et al. A novel recombinant cccDNA-based mouse model with long term maintenance of rcccDNA and antigenemia. Antiviral Res. 2020;180:104826.
2020	A targeted multi-omic analysis approach measures protein expression and low abundance transcripts on the single cell level	Cell Reports	Mair F, Erickson JR, Voillet V, et al. A targeted multi-omic analysis approach measures protein expression and low-abundance transcripts on the single-cell level. Cell Rep. 2020;31(1):107499.
2020	AbSeq protocol using the nano-well cartridge-based Rhapsody platform to generate protein and transcript expression data on the single-cell level	STAR Protocols	Erickson JR, Mair F, Bugos G, et al. AbSeq protocol using the nano-well cartridge-based Rhapsody platform to generate protein and transcript expression data on the single-cell level. STAR Protoc. 2020;1(2):100092.
2020	Analysis of single-cell RNAseq identifies transitional states of T cells associated with hepatocellular carcinoma	Clinical and Translational Medicine	Yang Y, Liu F, Liu W, et al. Analysis of single‐cell RNAseq identifies transitional states of T cells associated with hepatocellular carcinoma. Clin Transl Med. 2020;10(3):e133.
2020	Brain transforms natural killer cells that exacerbate brain edema after intracerebral hemorrhage	Journal of Experimental Medicine	Li Z, Li M, Shi SX, et al. Brain transforms natural killer cells that exacerbate brain edema after intracerebral hemorrhage. J Exp Med. 2020;217(12):e20200213.
2020	CD70 expression determines the therapeutic efficacy of expanded human regulatory T cells	Communications Biology	Hornero RA, Georgiadis C, Hua P, et al. CD70 expression determines the therapeutic efficacy of expanded human regulatory T cells. Commun Biol. 2020;3(1):375.
2020	Cellular heterogeneity landscape in laryngeal squamous cell carcinoma	International Journal of Cancer	Song L, Zhang S, Yu S, et al. Cellular heterogeneity landscape in laryngeal squamous cell carcinoma. Int J Cancer. 2020;147(10):2879-2890.
2020	Circulating miRNA spaceflight signature reveals targets for countermeasure development	Cell Reports	Malkani S, Chin CR, Cekanaviciute E, et al. Circulating miRNA spaceflight signature reveals targets for countermeasure development. Cell Rep. 2020;33(10):108448.
2020	Discovery of CD80 and CD86 as recent activation markers on regulatory T cells by protein-RNA single-cell analysis	Genome Medicine	Trzupek D, Dunstan M, Cutler AJ, et al. Discovery of CD80 and CD86 as recent activation markers on regulatory T cells by protein-RNA single-cell analysis. Genome Med. 2020;12(1):55.
2020	Distinct synovial tissue macrophage subsets regulate inflammation and remission in rheumatoid arthritis	Nature Medicine	Alivernini S, MacDonald L, Elmesmari A, et al. Distinct synovial tissue macrophage subsets regulate inflammation and remission in rheumatoid arthritis. Nat Med. 2020;26(8):1295-1306.
2020	Human tumor-infiltrating MAIT cells display hallmarks of bacterial antigen recognition in colorectal cancer	Cell Reports Medicine	Li S, Simoni Y, Becht E, et al. Human tumor-infiltrating MAIT cells display hallmarks of bacterial antigen recognition in colorectal cancer. Cell Rep Med. 2020;1(3):100039.
2020	Multi-omic, single-cell, and biochemical profiles of astronauts guide pharmacological strategies for returning to gravity	Cell Reports	Gertz ML, Chin CR, Tomoiaga D, et al. Multi-omic, single-cell, and biochemical profiles of astronauts guide pharmacological strategies for returning to gravity. Cell Rep. 2020;33(10):108429.
2020	Optimized workflow for single-cell transcriptomics on infectious diseases including COVID-19	STAR Protocols	De Domenico E, Bonaguro L, Schulte-Schrepping J, et al. Optimized workflow for single-cell transcriptomics on infectious diseases including COVID-19. STAR Protoc. 2020;1(3):100233.
2020	Severe COVID-19 is marked by a dysregulated 2 myeloid cell compartment	Cell	Schulte-Schrepping J, Reusch N, Paclik D, et al. Severe COVID-19 is marked by a dysregulated myeloid cell compartment. Cell. 2020;182(6):1419-1440.
2020	Single-cell sequencing of gliobastoma reveals central nervous system susceptibility to SARS-CoV-2	Frontiers in Oncology	Wu B, Wang W, Wang H, et al. Single-cell sequencing of glioblastoma reveals central nervous system susceptibility to SARS-CoV-2. Front Oncol. 2020;10:566599.
2020	Single-cell transcriptome profiling reveals neutrophil heterogeneity in homeostasis and infection	Nature Immunology	Xie X, Shi Q, Wu P, et al. Single-cell transcriptome profiling reveals neutrophil heterogeneity in homeostasis and infection. Nat Immunol. 2020;21(9):1119-1133.
2020	A targeted multi-omic analysis approach measures protein expression and low abundance transcripts on the single cell level	Cell Reports	Mair F, Erickson JR, Voillet V, et al. A Targeted Multi-omic Analysis Approach Measures Protein Expression and Low-Abundance Transcripts on the Single-Cell Level. Cell Rep. 2020;31(1):107499.
2020	Single-cell RNA-seq analysis identifies meniscus progenitors and reveals the progression of meniscus degeneration	Annals of the Rheumatic Diseases	Sun H, Wen X, Li H, et al. Single-cell RNA-seq analysis identifies meniscus progenitors and reveals the progression of meniscus degeneration. Annals of the Rheumatic Diseases. 2020;79:408-417.
2019	Chronic immune activation in systemic lupus erythematosus and the autoimmune PTPN22 Trp 620 risk allele drive the expansion of FOXP3 + regulatory T Cells and PD-1 expression	Frontiers in Immunology	Ferreira RC, Castro Dopico X, Oliveira JJ, et al. Chronic immune activation in systemic lupus erythematosus and the autoimmune PTPN22 Trp620 risk allele drive the expansion of FOXP3+ regulatory T cells and PD-1 expression. Front Immunol. 2019;10:2606.
2019	Quantitation of mRNA transcripts and proteins using the BD Rhapsody™ Single-Cell Analysis System	Advances in Experimental Medicine and Biology	Shum EY, Walczak EM, Chang C, Fan HC. (2019) Quantitation of mRNA Transcripts and Proteins Using the BD Rhapsody™ Single-Cell Analysis System. In: Suzuki Y. (eds) Advances in Experimental Medicine and Biology: Single Molecule and Single Cell Sequencing. Singapore:Springer; 2019;63-79.
2019	Reliability of human cortical organoid generation	Nature Methods	Yoon S, Elahi LS, Pașca AM, et al. Reliability of human cortical organoid generation. Nat Methods. 2019;16:75–78.
2019	Identification of a novel arthritis-associated osteoclast precursor macrophage regulated by FoxM1	Nature Immunology	Hasegawa T, Kikuta J, Sudo T, et al. Identification of a novel arthritis-associated osteoclast precursor macrophage regulated by FoxM1. Nat Immunol. 2019;20:1631–164.