Articles in this section

Past Publications using BD Rhapsody System

Year

Title

Publication

Citation

2020

A novel recombinant cccDNA-based mouse model with long term maintenance of rcccDNA and antigenemia Antiviral Research Wu M, Wang C, Shi B, et al. A novel recombinant cccDNA-based mouse model with long term maintenance of rcccDNA and antigenemia. Antiviral Res. 2020;180:104826.

2020

A targeted multi-omic analysis approach measures protein expression and low abundance transcripts on the single cell level Cell Reports Mair F, Erickson JR, Voillet V, et al. A targeted multi-omic analysis approach measures protein expression and low-abundance transcripts on the single-cell level. Cell Rep. 2020;31(1):107499.

2020

AbSeq protocol using the nano-well cartridge-based Rhapsody platform to generate protein and transcript expression data on the single-cell level STAR Protocols Erickson JR, Mair F, Bugos G, et al. AbSeq protocol using the nano-well cartridge-based Rhapsody platform to generate protein and transcript expression data on the single-cell level. STAR Protoc. 2020;1(2):100092.

2020

Analysis of single-cell RNAseq identifies transitional states of T cells associated with hepatocellular carcinoma Clinical and Translational Medicine Yang Y, Liu F, Liu W, et al. Analysis of single‐cell RNAseq identifies transitional states of T cells associated with hepatocellular carcinoma. Clin Transl Med. 2020;10(3):e133.

2020

Brain transforms natural killer cells that exacerbate brain edema after intracerebral hemorrhage Journal of Experimental Medicine Li Z, Li M, Shi SX, et al. Brain transforms natural killer cells that exacerbate brain edema after intracerebral hemorrhage. J Exp Med. 2020;217(12):e20200213.

2020

CD70 expression determines the therapeutic efficacy of expanded human regulatory T cells Communications Biology Hornero RA, Georgiadis C, Hua P, et al. CD70 expression determines the therapeutic efficacy of expanded human regulatory T cells. Commun Biol. 2020;3(1):375.

2020

Cellular heterogeneity landscape in laryngeal squamous cell carcinoma International Journal of Cancer Song L, Zhang S, Yu S, et al. Cellular heterogeneity landscape in laryngeal squamous cell carcinoma. Int J Cancer. 2020;147(10):2879-2890.

2020

Circulating miRNA spaceflight signature reveals targets for countermeasure development Cell Reports   Malkani S, Chin CR, Cekanaviciute E, et al. Circulating miRNA spaceflight signature reveals targets for countermeasure development. Cell Rep. 2020;33(10):108448.

2020

Discovery of CD80 and CD86 as recent activation markers on regulatory T cells by protein-RNA single-cell analysis Genome Medicine Trzupek D, Dunstan M, Cutler AJ, et al. Discovery of CD80 and CD86 as recent activation markers on regulatory T cells by protein-RNA single-cell analysis. Genome Med. 2020;12(1):55.

2020

Distinct synovial tissue macrophage subsets regulate inflammation and remission in rheumatoid arthritis Nature Medicine Alivernini S, MacDonald L, Elmesmari A, et al. Distinct synovial tissue macrophage subsets regulate inflammation and remission in rheumatoid arthritis. Nat Med. 2020;26(8):1295-1306.

2020

Human tumor-infiltrating MAIT cells display hallmarks of bacterial antigen recognition in colorectal cancer Cell Reports Medicine Li S, Simoni Y, Becht E, et al. Human tumor-infiltrating MAIT cells display hallmarks of bacterial antigen recognition in colorectal cancer. Cell Rep Med. 2020;1(3):100039.

2020

Multi-omic, single-cell, and biochemical profiles of astronauts guide pharmacological strategies for returning to gravity Cell Reports Gertz ML, Chin CR, Tomoiaga D, et al. Multi-omic, single-cell, and biochemical profiles of astronauts guide pharmacological strategies for returning to gravity. Cell Rep. 2020;33(10):108429.

2020

Optimized workflow for single-cell transcriptomics on infectious diseases including COVID-19 STAR Protocols De Domenico E, Bonaguro L, Schulte-Schrepping J, et al. Optimized workflow for single-cell transcriptomics on infectious diseases including COVID-19. STAR Protoc. 2020;1(3):100233.

2020

Severe COVID-19 is marked by a dysregulated 2 myeloid cell compartment Cell Schulte-Schrepping J, Reusch N, Paclik D, et al. Severe COVID-19 is marked by a dysregulated myeloid cell compartment. Cell. 2020;182(6):1419-1440.

2020

Single-cell sequencing of gliobastoma reveals central nervous system susceptibility to SARS-CoV-2

Frontiers in Oncology

Wu B, Wang W, Wang H, et al. Single-cell sequencing of glioblastoma reveals central nervous system susceptibility to SARS-CoV-2. Front Oncol. 2020;10:566599.

2020

Single-cell transcriptome profiling reveals neutrophil heterogeneity in homeostasis and infection

Nature Immunology

Xie X, Shi Q, Wu P, et al. Single-cell transcriptome profiling reveals neutrophil heterogeneity in homeostasis and infection. Nat Immunol. 2020;21(9):1119-1133.

2020

A targeted multi-omic analysis approach measures protein expression and low abundance transcripts on the single cell level

Cell Reports

Mair F, Erickson JR, Voillet V, et al. A Targeted Multi-omic Analysis Approach Measures Protein Expression and Low-Abundance Transcripts on the Single-Cell Level. Cell Rep. 2020;31(1):107499.

2020

Single-cell RNA-seq analysis identifies meniscus progenitors and reveals the progression of meniscus degeneration

Annals of the Rheumatic Diseases

Sun H, Wen X, Li H, et al. Single-cell RNA-seq analysis identifies meniscus progenitors and reveals the progression of meniscus degeneration. Annals of the Rheumatic Diseases. 2020;79:408-417.

2019

Chronic immune activation in systemic lupus erythematosus and the autoimmune PTPN22 Trp 620 risk allele drive the expansion of FOXP3 + regulatory T Cells and PD-1 expression

Frontiers in Immunology

Ferreira RC, Castro Dopico X, Oliveira JJ, et al. Chronic immune activation in systemic lupus erythematosus and the autoimmune PTPN22 Trp620 risk allele drive the expansion of FOXP3+ regulatory T cells and PD-1 expression. Front Immunol. 2019;10:2606.

2019

Quantitation of mRNA transcripts and proteins using the BD Rhapsody™ Single-Cell Analysis System

Advances in Experimental Medicine and Biology

Shum EY, Walczak EM, Chang C, Fan HC. (2019) Quantitation of mRNA Transcripts and Proteins Using the BD Rhapsody™ Single-Cell Analysis System. In: Suzuki Y. (eds) Advances in Experimental Medicine and Biology: Single Molecule and Single Cell Sequencing. Singapore:Springer; 2019;63-79.

2019

Reliability of human cortical organoid generation

Nature Methods

Yoon S, Elahi LS, Pașca AM, et al. Reliability of human cortical organoid generation. Nat Methods. 2019;16:75–78.

2019

Identification of a novel arthritis-associated osteoclast precursor macrophage regulated by FoxM1

Nature Immunology

Hasegawa T, Kikuta J, Sudo T, et al. Identification of a novel arthritis-associated osteoclast precursor macrophage regulated by FoxM1. Nat Immunol. 2019;20:1631–164.

 

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